usage: __main__.py [-h] [--interpolation {linear,nearest}] [--keep_dtype]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_file in_ref_file out_file
Reshape / reslice / resample *.nii or *.nii.gz using a reference.
This script can be used to align freesurfer/civet output, as .mgz,
to the original input image.
>>> scil_volume_reshape_to_reference.py wmparc.mgz t1.nii.gz wmparc_t1.nii.gz\
--interpolation nearest
To
- pad or crop the volume to match the desired shape, use
scil_volume_reshape.py.
- interpolate/reslice to an arbitrary voxel size, use
scil_volume_resample.py.
- crop a volume to remove empty space, use scil_volume_crop.py.
Formerly: scil_reshape_to_reference.py
positional arguments:
in_file Path of the image (.nii or .mgz) to be reshaped.
in_ref_file Path of the reference image (.nii).
out_file Output filename of the reshaped image (.nii).
options:
-h, --help show this help message and exit
--interpolation {linear,nearest}
Interpolation: "linear" or "nearest". [linear]
--keep_dtype If True, keeps the data_type of the input image (in_file) when saving the output image (out_file).
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Scilpy version: 2.0.2