usage: __main__.py [-h] [--tractogram TRACTOGRAM] [--colormap COLORMAP]
[--seed_opacity SEED_OPACITY]
[--tractogram_shape {line,tube}]
[--tractogram_opacity TRACTOGRAM_OPACITY]
[--tractogram_width TRACTOGRAM_WIDTH]
[--tractogram_color R G B [R G B ...]]
[--background R G B [R G B ...]]
[-v [{DEBUG,INFO,WARNING}]]
in_seed_map
Visualize seeds as 3D points, with heatmaps corresponding to seed density
Example usages:
>>> scil_viz_tractogram_seeds_3d.py seeds.nii.gz --tractogram tractogram.trk
positional arguments:
in_seed_map Seed density map.
options:
-h, --help show this help message and exit
--tractogram TRACTOGRAM
Tractogram coresponding to the seeds.
--colormap COLORMAP Name of the map for the density coloring. Can be any colormap that matplotlib offers.
[Default: bone]
--seed_opacity SEED_OPACITY
Opacity of the contour generated.
[Default: 0.5]
--tractogram_shape {line,tube}
Display streamlines either as lines or tubes.
[Default: tube]
--tractogram_opacity TRACTOGRAM_OPACITY
Opacity of the streamlines.
[Default: 0.5]
--tractogram_width TRACTOGRAM_WIDTH
Width of tubes or lines representing streamlines.
[Default: 0.05]
--tractogram_color R G B [R G B ...]
Color for the tractogram.
--background R G B [R G B ...]
RBG values [0, 255] of the color of the background.
[Default: [0, 0, 0]]
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.