scil_tractogram_convert.py

usage: __main__.py [-h] [--legacy_vtk] [--no_bbox_check]
                   [--reference REFERENCE] [-v [{DEBUG,INFO,WARNING}]] [-f]
                   in_tractogram output_name

Conversion of '.tck', '.trk', '.fib', '.vtk' and 'dpy' files using updated file
format standard. TRK file always needs a reference file, a NIFTI, for
conversion. The FIB file format is in fact a VTK, MITK Diffusion supports it.

Formerly: scil_convert_tractogram.py

positional arguments:
  in_tractogram         Tractogram filename. Format must be one of
                        trk, tck, vtk, fib, dpy
  output_name           Output filename. Format must be one of
                        trk, tck, vtk, fib, dpy

options:
  -h, --help            show this help message and exit
  --legacy_vtk          Use the legacy VTK format for streamlines. This is the old VTK format, which is supported by MI-Brain.
  --no_bbox_check       Activate to ignore validity of the bounding box during loading / saving of
                        tractograms (ignores the presence of invalid streamlines).
  --reference REFERENCE
                        Reference anatomy for tck/vtk/fib/dpy file
                        support (.nii or .nii.gz).
  -v [{DEBUG,INFO,WARNING}]
                        Produces verbose output depending on the provided level.
                        Default level is warning, default when using -v is info.
  -f                    Force overwriting of the output files.

Scilpy version: 2.0.2