usage: __main__.py [-h] [--out OUT_FILE] [--stats] [--id VALUE_ID]
[-v [{DEBUG,INFO,WARNING}]] [-f]
IN_FILE
Count the number of non-zero voxels in an image file.
If you give it an image with more than 3 dimensions, it will summarize the 4th
(or more) dimension to one voxel, and then find non-zero voxels over this.
This means that if there is at least one non-zero voxel in the 4th dimension,
this voxel of the 3D volume will be considered as non-zero.
Formerly: scil_count_non_zero_voxels.py
positional arguments:
IN_FILE Input file name, in nifti format.
options:
-h, --help show this help message and exit
--out OUT_FILE Name of the output file, which will be saved as a text file.
--stats If set, output the value using a stats format. Using this synthax will append
a line to the output file, instead of creating a file with only one line.
This is useful to create a file to be used as the source of data for a graph.
Can be combined with --id
--id VALUE_ID Id of the current count. If used, the value of this argument will be
output (followed by a ":") before the count value.
Mostly useful with --stats.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.