scil_rgb_convert.py

usage: __main__.py [-h] [-v [{DEBUG,INFO,WARNING}]] [-f] in_image out_image

Converts a RGB image encoded as a 4D image to a RGB image encoded as
a 3D image, or vice versa.

Typically, most software tools used in the SCIL (including MI-Brain) use
the former, while Trackvis uses the latter.

Input
-Case 1: 4D image where the 4th dimension contains 3 values.
-Case 2: 3D image, in Trackvis format where each voxel contains a
         tuple of 3 elements, one for each value.

Output
-Case 1: 3D image, in Trackvis format where each voxel contains a
         tuple of 3 elements, one for each value (uint8).
-Case 2: 4D image where the 4th dimension contains 3 values (uint8).

Formerly: scil_convert_rgb.py

positional arguments:
  in_image              name of input RGB image.
                        Either 4D or 3D image.
  out_image             name of output RGB image.
                        Either 3D or 4D image.

options:
  -h, --help            show this help message and exit
  -v [{DEBUG,INFO,WARNING}]
                        Produces verbose output depending on the provided level.
                        Default level is warning, default when using -v is info.
  -f                    Force overwriting of the output files.

Scilpy version: 2.0.2