usage: __main__.py [-h] [--stats_over_population] [--nb_pts NB_PTS]
[--display_means]
[--fill_color FILL_COLOR | --dict_colors DICT_COLORS]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_json out_dir
Plot all mean/std per point for a subject or population json file from
tractometry-flow.
WARNING: For population, the displayed STDs is only showing the variation
of the means. It does not account intra-subject STDs.
Formerly: scil_plot_mean_std_per_point.py
positional arguments:
in_json JSON file containing the mean/std per point. For example, can be created using scil_bundle_mean_std.py.
out_dir Output directory.
options:
-h, --help show this help message and exit
--stats_over_population
If set, consider the input stats to be over an entire population and not subject-based.
--nb_pts NB_PTS Force the number of divisions for the bundles.
Avoid unequal plots across datasets, replace missing data with zeros.
--display_means Display the subjects means as semi-transparent line.
Poor results when the number of subject is high.
--fill_color FILL_COLOR
Hexadecimal RGB color filling the region between mean +/- std. The hexadecimal RGB color should be formatted as 0xRRGGBB.
--dict_colors DICT_COLORS
Dictionnary mapping basename to color.Same convention as --color.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.