usage: __main__.py [-h] [-m VTS_MASK] [-n NB_STEPS] [-s STEP_SIZE]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_surface out_surface
Script to smooth a surface with a Laplacian blur.
For a standard FreeSurfer white matter mesh a step_size from 0.1 to 10
is recommended
Smoothing time = step_size * nb_steps
small amount of smoothing [step_size 1, nb_steps 10]
moderate amount of smoothing [step_size 10, nb_steps 100]
large amount of smoothing [step_size 100, nb_steps 1000]
Formerly: scil_smooth_surface.py
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Reference:
[1] St-Onge, E., Daducci, A., Girard, G. and Descoteaux, M. 2018.
Surface-enhanced tractography (SET). NeuroImage.
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positional arguments:
in_surface Input surface (.vtk).
out_surface Output smoothed surface (.vtk).
options:
-h, --help show this help message and exit
-m VTS_MASK, --vts_mask VTS_MASK
Vertex mask no smoothing where mask equals 0 (.npy).
-n NB_STEPS, --nb_steps NB_STEPS
Number of steps for laplacian smooth [2].
-s STEP_SIZE, --step_size STEP_SIZE
Laplacian smooth step size [5.0].
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Scilpy version: 2.0.2