usage: __main__.py [-h] [--title TITLE] [--x_label X_LABEL] [--colors COLORS]
[--show_only] [-v [{DEBUG,INFO,WARNING}]] [-f]
in_metric in_mask n_bins out_png
Script to display a histogram of a metric (FA, MD, etc.) from a binary mask
(wm mask, vascular mask, ect.).
These two images must be coregister with each other.
>>> scil_viz_volume_histogram.py metric.nii.gz mask_bin.nii.gz 8
out_filename_image.png
positional arguments:
in_metric Metric map ex : FA, MD,... .
in_mask Binary mask data to extract value.
n_bins Number of bins to use for the histogram.
out_png Output filename for the figure.
options:
-h, --help show this help message and exit
--show_only Do not save the figure, only display.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Histogram options:
--title TITLE Use the provided info for the histogram title. [Histogram]
--x_label X_LABEL Use the provided info for the x axis name.
--colors COLORS Use the provided info for the bars color. [#0504aa]