Scripts
- scil_NODDI_maps.py
- scil_NODDI_priors.py
- scil_aodf_metrics.py
- scil_bids_validate.py
- scil_bingham_metrics.py
- scil_btensor_metrics.py
- scil_bundle_fixel_analysis.py
- scil_bundle_generate_priors.py
- scil_bundle_mean_fixel_afd.py
- scil_bundle_mean_fixel_afd_from_hdf5.py
- scil_bundle_mean_fixel_bingham_metric.py
- scil_bundle_mean_fixel_mrds_metric.py
- scil_bundle_mean_std.py
- scil_bundle_volume_per_label.py
- scil_connectivity_compute_pca.py
- scil_connectivity_filter.py
- scil_connectivity_hdf5_average_density_map.py
- scil_connectivity_math.py
- scil_connectivity_print_filenames.py
- scil_denoising_nlmeans.py
- scil_dki_metrics.py
- scil_dti_convert_tensors.py
- scil_dti_metrics.py
- scil_dwi_apply_bias_field.py
- scil_dwi_compute_snr.py
- scil_dwi_concatenate.py
- scil_dwi_convert_FDF.py
- scil_dwi_detect_volume_outliers.py
- scil_dwi_extract_b0.py
- scil_dwi_extract_shell.py
- scil_dwi_powder_average.py
- scil_dwi_prepare_eddy_command.py
- scil_dwi_prepare_topup_command.py
- scil_dwi_reorder_philips.py
- scil_dwi_split_by_indices.py
- scil_dwi_to_sh.py
- scil_fodf_max_in_ventricles.py
- scil_fodf_memsmt.py
- scil_fodf_metrics.py
- scil_fodf_msmt.py
- scil_fodf_ssst.py
- scil_fodf_to_bingham.py
- scil_freewater_maps.py
- scil_freewater_priors.py
- scil_frf_mean.py
- scil_frf_memsmt.py
- scil_frf_msmt.py
- scil_frf_set_diffusivities.py
- scil_frf_ssst.py
- scil_get_version.py
- scil_gradients_apply_transform.py
- scil_gradients_convert.py
- scil_gradients_generate_sampling.py
- scil_gradients_modify_axes.py
- scil_gradients_normalize_bvecs.py
- scil_gradients_round_bvals.py
- scil_gradients_validate_correct.py
- scil_gradients_validate_correct_eddy.py
- scil_header_print_info.py
- scil_header_validate_compatibility.py
- scil_json_convert_entries_to_xlsx.py
- scil_json_harmonize_entries.py
- scil_json_merge_entries.py
- scil_labels_combine.py
- scil_labels_dilate.py
- scil_labels_from_mask.py
- scil_labels_remove.py
- scil_labels_split_volume_by_ids.py
- scil_labels_split_volume_from_lut.py
- scil_lesions_generate_nawm.py
- scil_lesions_info.py
- scil_mrds_metrics.py
- scil_mrds_select_number_of_tensors.py
- scil_mti_adjust_B1_header.py
- scil_mti_maps_MT.py
- scil_mti_maps_ihMT.py
- scil_plot_stats_per_point.py
- scil_qball_metrics.py
- scil_rgb_convert.py
- scil_sh_convert.py
- scil_sh_fusion.py
- scil_sh_to_aodf.py
- scil_sh_to_rish.py
- scil_sh_to_sf.py
- scil_stats_group_comparison.py
- scil_surface_apply_transform.py
- scil_surface_convert.py
- scil_surface_flip.py
- scil_surface_smooth.py
- scil_tracking_pft.py
- scil_tracking_pft_maps.py
- scil_tracking_pft_maps_edit.py
- scil_tractogram_assign_custom_color.py
- scil_tractogram_assign_uniform_color.py
- scil_tractogram_commit.py
- scil_tractogram_compute_TODI.py
- scil_tractogram_compute_density_map.py
- scil_tractogram_convert.py
- scil_tractogram_convert_hdf5_to_trk.py
- scil_tractogram_convert_trk_to_hdf5.py
- scil_tractogram_count_streamlines.py
- scil_tractogram_detect_loops.py
- scil_tractogram_dpp_math.py
- scil_tractogram_dps_math.py
- scil_tractogram_filter_by_anatomy.py
- scil_tractogram_filter_by_length.py
- scil_tractogram_filter_by_orientation.py
- scil_tractogram_filter_by_roi.py
- scil_tractogram_print_info.py
- scil_tractogram_project_streamlines_to_map.py
- scil_tractogram_qbx.py
- scil_tractogram_register.py
- scil_tractogram_remove_invalid.py
- scil_tractogram_resample_nb_points.py
- scil_tractogram_seed_density_map.py
- scil_tractogram_segment_with_bundleseg.py
- scil_tractogram_segment_with_recobundles.py
- scil_tractogram_smooth.py
- scil_viz_connectivity.py
- scil_viz_volume_histogram.py
- scil_viz_volume_scatterplot.py
- scil_volume_apply_transform.py
- scil_volume_count_non_zero_voxels.py
- scil_volume_crop.py
- scil_volume_distance_map.py
- scil_volume_flip.py
- scil_volume_math.py
- scil_volume_remove_outliers_ransac.py
- scil_volume_resample.py
- scil_volume_reshape.py
- scil_volume_reslice_to_reference.py
- scil_volume_stats_in_ROI.py
- scil_volume_stats_in_labels.py