usage: __main__.py [-h] [--labels LABELS [LABELS ...]]
[--background_label BACKGROUND_LABEL]
[--min_volume MIN_VOLUME] [-v [{DEBUG,INFO,WARNING}]] [-f]
in_mask out_labels
Script to obtain labels from a binary mask which contains multiple blobs.
The script will assign a label to each blob in the mask. The background label
is excluded from the labels list. By default, the background label is 0 and
the labels are assigned in increasing order starting from 1.
positional arguments:
in_mask Input mask file.
out_labels Output label file.
options:
-h, --help show this help message and exit
--labels LABELS [LABELS ...]
Labels to assign to each blobs in the mask. Excludes the background label.
--background_label BACKGROUND_LABEL
Label to assign to the background. [0]
--min_volume MIN_VOLUME
Minimum volume in mm3 [7],Useful for lesions.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Scilpy version: 2.0.2