usage: __main__.py [-h] [--out_name OUT_NAME] [--only_rigid]
[--moving_tractogram_ref MOVING_TRACTOGRAM_REF]
[--static_tractogram_ref STATIC_TRACTOGRAM_REF]
[-v [{DEBUG,INFO,WARNING}]] [-f]
moving_tractogram static_tractogram
Generate a linear transformation matrix from the registration of
2 tractograms. Typically, this script is run before
scil_tractogram_apply_transform.py.
For more informations on how to use the various registration scripts
see the doc/tractogram_registration.md readme file
Formerly: scil_register_tractogram.py
positional arguments:
moving_tractogram Path of the moving tractogram.
static_tractogram Path of the target tractogram.
options:
-h, --help show this help message and exit
--out_name OUT_NAME Filename of the transformation matrix,
the registration type will be appended as a suffix,
[<out_name>_<affine/rigid>.txt]
--only_rigid Will only use a rigid transformation, uses affine by default.
--moving_tractogram_ref MOVING_TRACTOGRAM_REF
Reference anatomy for moving_tractogram (if tck/vtk/fib/dpy) file
support (.nii or .nii.gz).
--static_tractogram_ref STATIC_TRACTOGRAM_REF
Reference anatomy for static_tractogram (if tck/vtk/fib/dpy) file
support (.nii or .nii.gz).
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
References:
[1] E. Garyfallidis, O. Ocegueda, D. Wassermann, M. Descoteaux
Robust and efficient linear registration of white-matter fascicles in the
space of streamlines, NeuroImage, Volume 117, 15 August 2015, Pages 124-140
(http://www.sciencedirect.com/science/article/pii/S1053811915003961)