usage: __main__.py [-h] [--ratio_voxels [RATIO_VOXELS]]
[--ratio_streamlines [RATIO_STREAMLINES]]
[--reference REFERENCE] [-v [{DEBUG,INFO,WARNING}]] [-f]
in_bundles [in_bundles ...] output_prefix
Use multiple versions of a same bundle and detect the most probable voxels by
using a threshold on the occurence, voxel-wise. With threshold 0.5, this is
a majority vote. This is useful to generate an average representation from
bundles of a given population.
If streamlines originate from the same tractogram (ex, to compare various
bundle clustering techniques), streamline-wise vote is available to find the
streamlines most often included in the bundle.
Formerly: scil_perform_majority_vote.py
positional arguments:
in_bundles Input bundles filename(s). All tractograms must have identical headers.
output_prefix Output prefix. Ex: my_path/voting_. The suffixes will be: streamlines.trk and voxels.nii.gz
options:
-h, --help show this help message and exit
--ratio_voxels [RATIO_VOXELS]
Threshold on the ratio of bundles with at least one streamine in a
given voxel to consider it as part of the 'gold standard'. Default if set: 0.5.
--ratio_streamlines [RATIO_STREAMLINES]
If all bundles come from the same tractogram, use this to generate
a voting for streamlines too. The associated value is the threshold on the ratio of
bundles including the streamline to consider it as part of the 'gold standard'. [0.5]
--reference REFERENCE
Reference anatomy for tck/vtk/fib/dpy file
support (.nii or .nii.gz).
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.