usage: __main__.py [-h] [--out_dir OUT_DIR] [--out_prefix OUT_PREFIX]
(--scilpy_lut {dk_aggregate_structures,freesurfer_subcortical,freesurfer_desikan_killiany} | --custom_lut CUSTOM_LUT)
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_label
Split a label image into multiple images where the name of the output images
is taken from a lookup table (ex: left-lateral-occipital.nii.gz,
right-thalamus.nii.gz, ...). Only the labels included in the lookup table
are extracted.
IMPORTANT: your label image must be of an integer type.
Formerly: scil_split_volume_by_labels.py
positional arguments:
in_label Path of the input label file, in a format supported by Nibabel.
options:
-h, --help show this help message and exit
--out_dir OUT_DIR Put all ouptput images in a specific directory.
--out_prefix OUT_PREFIX
Prefix to be used for each output image.
--scilpy_lut {dk_aggregate_structures,freesurfer_subcortical,freesurfer_desikan_killiany}
Lookup table, in the file scilpy/data/LUT, used to name the output files.
--custom_lut CUSTOM_LUT
Path of the lookup table file, used to name the output files.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.