usage: __main__.py [-h] [--nb_points NB_POINTS]
[--out_centroids OUT_CENTROIDS] [--reference REFERENCE]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_tractogram dist_thresh out_clusters_dir
Compute clusters using QuickBundlesX and save them separately.
We cannot know the number of clusters in advance.
Quickbundles:
Garyfallidis, E. et al. (2012). Quickbundles, a method for tractography
simplification. Frontiers in neuroscience, 6, 175.
QuickbundlesX:
Garyfallidis, E. et al. (2016) QuickBundlesX: sequential clustering of millions
of streamlines in multiple levels of detail at record execution time. 24th
International Society of Magnetic Resonance in Medicine (ISMRM).
"QuickBundlesX shows a remarkable 20+X speedup over its predecessor"
Formerly: scil_compute_qbx.py
positional arguments:
in_tractogram Tractogram filename.
Path of the input tractogram or bundle.
dist_thresh Last QuickBundlesX threshold in mm. Typically
the value are between 10-20mm.
out_clusters_dir Path where to save the clusters directory.
options:
-h, --help show this help message and exit
--nb_points NB_POINTS
Streamlines will be resampled to have this number of points [20].
--out_centroids OUT_CENTROIDS
Output tractogram filename.
Format must be readable by the Nibabel API.
--reference REFERENCE
Reference anatomy for tck/vtk/fib/dpy file
support (.nii or .nii.gz).
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Scilpy version: 2.0.2