usage: __main__.py [-h] [--bval BVAL] [--bvec BVEC]
[--flip dimension [dimension ...]]
[--swap dimension [dimension ...]]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_b0_path in_dwi_path out_path
Converts a Varian FDF file or directory to a nifti file.
If the procpar contains diffusion information, it will be saved as bval and
bvec in the same folder as the output file.
ex: scil_dwi_convert_FDF.py semsdw/b0_folder/ semsdw/dwi_folder/ dwi.nii.gz --bval dwi.bval --bvec dwi.bvec -f
Formerly: scil_convert_fdf.py
positional arguments:
in_b0_path Path to the b0 FDF file or folder to convert.
in_dwi_path Path to the DWI FDF file or folder to convert.
out_path Path to the nifti file to write on disk.
options:
-h, --help show this help message and exit
--bval BVAL Path to the bval file to write on disk.
--bvec BVEC Path to the bvec file to write on disk.
--flip dimension [dimension ...]
The axes you want to flip. eg: to flip the x and y axes use: x y. [None]
--swap dimension [dimension ...]
The axes you want to swap. eg: to swap the x and y axes use: x y. [None]
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.