usage: __main__.py [-h] -i INDICES [INDICES ...] [--background BACKGROUND]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_labels out_labels
Script to remove specific labels from an atlas volume.
>>> scil_labels_remove.py DKT_labels.nii out_labels.nii.gz -i 5001 5002
Formerly: scil_remove_labels.py
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Reference:
[1] Al-Sharif N.B., St-Onge E., Vogel J.W., Theaud G.,
Evans A.C. and Descoteaux M. OHBM 2019.
Surface integration for connectome analysis in age prediction.
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positional arguments:
in_labels Input labels volume.
out_labels Output labels volume.
options:
-h, --help show this help message and exit
-i INDICES [INDICES ...], --indices INDICES [INDICES ...]
List of labels indices to remove.
--background BACKGROUND
Integer used for removed labels [0].
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Scilpy version: 2.0.2