usage: __main__.py [-h] [--flip_axes FLIP_AXES FLIP_AXES FLIP_AXES]
[--reference REFERENCE] [-v [{DEBUG,INFO,WARNING}]] [-f]
in_surface out_surface
Script to convert surface formats
Supported formats:
".vtk", ".vtp", ".ply", ".stl", ".xml", ".obj"
and FreeSurfer surfaces
> scil_surface_convert.py surf.vtk converted_surf.ply
Formerly: scil_convert_surface.py
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Reference:
[1] St-Onge, E., Daducci, A., Girard, G. and Descoteaux, M. 2018.
Surface-enhanced tractography (SET). NeuroImage.
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positional arguments:
in_surface Input a surface (FreeSurfer or supported by VTK).
out_surface Output surface (formats supported by VTK).
Recommended extension: .vtk or .ply
options:
-h, --help show this help message and exit
--flip_axes FLIP_AXES FLIP_AXES FLIP_AXES
Flip axes for RAS or LPS convention. Default is LPS convention (MI-Brain) [-1, -1, 1].
--reference REFERENCE
Reference image to extract the transformation matrix to align the freesurfer surface with the T1.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Scilpy version: 2.0.2