usage: __main__.py [-h] [--indent INDENT] [--sort_keys]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_file out_file
This script will harmonize a json file by adding missing keys and values
that differs between the different layers of the dictionary.
This is used only (for now) in Aggregate_All_* portion of tractometry-flow,
to counter the problem of missing bundles/metrics/lesions between subjects.
The most common use case is when specific subjects have missing bundles
which will cause a panda array to be incomplete, and thus crash. Finding out
the union of all bundles/metrics/lesions will allow to create a complete json
(but with NaN for missing values).
Formerly: scil_harmonize_json.py
positional arguments:
in_file Input file (json).
out_file Output file (json).
options:
-h, --help show this help message and exit
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Json options:
--indent INDENT Indent for json pretty print.
--sort_keys Sort keys in output json.