usage: __main__.py [-h] [--shells SHELLS [SHELLS ...]]
[--out_suffix OUT_SUFFIX] [--out_dir OUT_DIR]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_dwi in_bval in_bvec in_template
Register DWI to a template for screenshots.
The templates are on http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin2009
For quick quality control, the MNI template can be downsampled to 2mm iso.
Axial, coronal and sagittal slices are captured.
positional arguments:
in_dwi Path of the input diffusion volume.
in_bval Path of the bval file, in FSL format.
in_bvec Path of the bvec file, in FSL format.
in_template Path to the target MNI152 template for
registration, use the one provided online.
options:
-h, --help show this help message and exit
--shells SHELLS [SHELLS ...]
Shells to use for DTI fit (usually below 1200), b0 must be listed.
--out_suffix OUT_SUFFIX
Add a suffix to the output, else the axis name is used.
--out_dir OUT_DIR Put all images in a specific directory.
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.