usage: __main__.py [-h] [--binary [FIXED_VALUE]] [--endpoints_only]
[--reference REFERENCE] [-v [{DEBUG,INFO,WARNING,ERROR}]]
[-f]
in_tractogram out_img
Compute a density map from a streamlines file. Can be binary.
This script correctly handles compressed streamlines.
To get only a map of the endpoints, use option --endpoints_only. To get a
separate map for the head and tail, see
>> scil_bundle_compute_endpoints_map
positional arguments:
in_tractogram Tractogram filename.
out_img path of the output image file.
options:
-h, --help show this help message and exit
--binary [FIXED_VALUE]
If set, will store the same value for all intersected voxels,
creating a binary map.When set without a value, 1 is used (and dtype
uint8). If a value is given, will be used as the stored value.
--endpoints_only If set, will only use the endpoints.
To get a head and a tail maps, see scil_bundle_compute_endpoints_map.
--reference REFERENCE
Reference anatomy for tck/vtk/fib/dpy file
support (.nii or .nii.gz).
-v [{DEBUG,INFO,WARNING,ERROR}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
2.2.2