usage: __main__.py [-h] [--uniform_coloring R G B] [--random_coloring SEED]
[--zoom ZOOM] [--ttf TTF] [--ttf_size TTF_SIZE]
[--opacity_background OPACITY_BACKGROUND]
[--resolution_of_thumbnails RESOLUTION_OF_THUMBNAILS]
[--light_screenshot] [--no_information] [--no_bundle_name]
[--no_streamline_number] [--reference REFERENCE]
[-v [{DEBUG,INFO,WARNING}]] [-f]
in_volume in_bundles [in_bundles ...] out_image
Visualize bundles from a list. The script will output a mosaic (image) with
screenshots, 6 views per bundle in the list.
positional arguments:
in_volume Volume used as background (e.g. T1, FA, b0).
in_bundles List of tractography files supported by nibabel or binary mask files.
out_image Name of the output image mosaic (e.g. mosaic.jpg, mosaic.png).
options:
-h, --help show this help message and exit
--uniform_coloring R G B
Assign an uniform color to streamlines (or ROIs).
--random_coloring SEED
Assign a random color to streamlines (or ROIs).
--zoom ZOOM Rendering zoom. A value greater than 1 is a zoom-in,
a value less than 1 is a zoom-out [1.0].
--ttf TTF Path of the true type font to use for legends.
--ttf_size TTF_SIZE Font size (int) to use for the legends [35].
--opacity_background OPACITY_BACKGROUND
Opacity of background image, between 0 and 1.0 [0.4].
--resolution_of_thumbnails RESOLUTION_OF_THUMBNAILS
Resolution of thumbnails used in mosaic [300].
--light_screenshot Keep only 3 views instead of 6 [False].
--no_information Don't display axis and bundle information [False].
--no_bundle_name Don't display bundle name [False].
--no_streamline_number
Don't display bundle streamlines number [False].
--reference REFERENCE
Reference anatomy for tck/vtk/fib/dpy file
support (.nii or .nii.gz).
-v [{DEBUG,INFO,WARNING}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.