usage: __main__.py [-h] [--minL MINL] [--maxL MAXL] [--no_empty]
[--display_counts] [--out_rejected OUT_REJECTED]
[--indent INDENT] [--sort_keys] [--reference REFERENCE]
[-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
in_tractogram out_tractogram
Script to filter streamlines based on their lengths.
See also:
- scil_tractogram_detect_loops
- scil_tractogram_filter_by_anatomy
(Filtering by length is its step1)
- scil_tractogram_filter_by_orientation
- scil_tractogram_filter_by_roi
positional arguments:
in_tractogram Streamlines input file name.
out_tractogram Streamlines output file name.
options:
-h, --help show this help message and exit
--minL MINL Minimum length of streamlines, in mm. [0.0]
--maxL MAXL Maximum length of streamlines, in mm. [inf]
--no_empty Do not write file if there is no streamline.
--display_counts Print streamline count before and after filtering
--out_rejected OUT_REJECTED
If specified, save rejected streamlines to this file.
--reference REFERENCE
Reference anatomy for tck/vtk/fib/dpy file
support (.nii or .nii.gz).
-v [{DEBUG,INFO,WARNING,ERROR}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
Json options:
--indent INDENT Indent for json pretty print.
--sort_keys Sort keys in output json.
2.2.2