usage: __main__.py [-h] [--in_tractogram_obstacle IN_TRACTOGRAM_OBSTACLE]
[--ref_tractogram REF_TRACTOGRAM]
[--out_screenshot OUT_SCREENSHOT]
[--win_size WIN_SIZE WIN_SIZE] [-f] [--reference REFERENCE]
in_tractogram_invalid
Visualize collisions given by scil_tractogram_filter_collisions with
the --save_colliding parameter.
positional arguments:
in_tractogram_invalid
Tractogram file containing the colliding
streamlines that have been filtered, along their
collision point as data_per_streamline (must be
.trk). This file is obtained from the
scil_tractogram_filter_collisions script.
options:
-h, --help show this help message and exit
--in_tractogram_obstacle IN_TRACTOGRAM_OBSTACLE
Tractogram file containing the streamlines that
that [in_tractogram_invalid] has collided with. Will
be overlaid in the viewing window. This file is
obtained from the scil_tractogram_filter_collisions
script.
--ref_tractogram REF_TRACTOGRAM
Tractogram file containing the full tractogram
as visual reference (must be .trk or .tck). It will be
overlaid in white and very low opacity.
--out_screenshot OUT_SCREENSHOT
If set, save a screenshot of the result in the
specified filename (.png, .bmp, .jpeg or .jpg).
--win_size WIN_SIZE WIN_SIZE
-f Force overwriting of the output files.
--reference REFERENCE
Reference anatomy for tck/vtk/fib/dpy file
support (.nii or .nii.gz).
2.2.2