usage: __main__.py [-h] [--slice_index SLICE_INDEX] [--win_dims WIDTH HEIGHT]
[--interactor {image,trackball}]
[--axis_name {sagittal,coronal,axial}] [--silent]
[--output OUTPUT] [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
[--sphere {repulsion100,repulsion200,repulsion724,symmetric362,symmetric642,symmetric724}]
[--color_per_lobe]
in_bingham
Visualize 2-dimensional Bingham volume slice loaded from disk. The volume is
assumed to be saved from scil_fodf_to_bingham.
Given an image of Bingham coefficients, this script displays a slice in a
given orientation.
Note. The interactive visualization is not verified by tests. If you encounter
any bug, please report it to our team or use --silent.
positional arguments:
in_bingham Input SH image file. Expecting data to be of size (X, Y, Z, nb_lobes, 7)
options:
-h, --help show this help message and exit
--slice_index SLICE_INDEX
Index of the slice to visualize along a given axis. Defaults to middle of volume.
--win_dims WIDTH HEIGHT
The dimensions for the vtk window. [(768, 768)]
--interactor {image,trackball}
Specify interactor mode for vtk window. [trackball]
--axis_name {sagittal,coronal,axial}
Name of the axis to visualize. [axial]
--silent Disable interactive visualization.
--output OUTPUT Path to output image file.
-v [{DEBUG,INFO,WARNING,ERROR}]
Produces verbose output depending on the provided level.
Default level is warning, default when using -v is info.
-f Force overwriting of the output files.
--sphere {repulsion100,repulsion200,repulsion724,symmetric362,symmetric642,symmetric724}
Name of the sphere used to reconstruct SF. [symmetric362]
--color_per_lobe Color each bingham distribution with a different color. [False]
2.2.2