.. _scil_tractogram_compute_density_map:

scil_tractogram_compute_density_map
===================================

::

	usage: __main__.py [-h] [--binary [FIXED_VALUE]] [--endpoints_only]
	                   [--reference REFERENCE] [-v [{DEBUG,INFO,WARNING,ERROR}]]
	                   [-f]
	                   in_tractogram out_img
	
	Compute a density map from a streamlines file. Can be binary.
	
	This script correctly handles compressed streamlines.
	
	To get only a map of the endpoints, use option --endpoints_only. To get a
	separate map for the head and tail, see
	>> scil_bundle_compute_endpoints_map
	
	positional arguments:
	  in_tractogram         Tractogram filename.
	  out_img               path of the output image file.
	
	options:
	  -h, --help            show this help message and exit
	  --binary [FIXED_VALUE]
	                        If set, will store the same value for all intersected voxels, 
	                        creating a binary map.When set without a value, 1 is used (and dtype 
	                        uint8). If a value is given, will be used as the stored value.
	  --endpoints_only      If set, will only use the endpoints.
	                        To get a head and a tail maps, see scil_bundle_compute_endpoints_map.
	  --reference REFERENCE
	                        Reference anatomy for tck/vtk/fib/dpy file
	                        support (.nii or .nii.gz).
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2