.. _scil_viz_dti_screenshot:

scil_viz_dti_screenshot
=======================

::

	usage: __main__.py [-h] [--shells SHELLS [SHELLS ...]]
	                   [--out_suffix OUT_SUFFIX] [--out_dir OUT_DIR]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_dwi in_bval in_bvec in_template
	
	Register DWI to a template for screenshots.
	The templates are on http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin2009
	
	For quick quality control, the MNI template can be downsampled to 2mm iso.
	Axial, coronal and sagittal slices are captured.
	
	positional arguments:
	  in_dwi                Path of the input diffusion volume.
	  in_bval               Path of the bval file, in FSL format.
	  in_bvec               Path of the bvec file, in FSL format.
	  in_template           Path to the target MNI152 template for 
	                        registration, use the one provided online.
	
	options:
	  -h, --help            show this help message and exit
	  --shells SHELLS [SHELLS ...]
	                        Shells to use for DTI fit (usually below 1200), b0 must be listed.
	  --out_suffix OUT_SUFFIX
	                        Add a suffix to the output, else the axis name is used.
	  --out_dir OUT_DIR     Put all images in a specific directory.
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2