.. _scil_volume_apply_transform:

scil_volume_apply_transform
===========================

::

	usage: __main__.py [-h] [--inverse] [--keep_dtype]
	                   [--interpolation {linear,nearest}]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_file in_target_file in_transfo out_name
	
	Transform Nifti (.nii.gz) using an affine/rigid transformation.
	
	For more information on how to use the registration script, follow this link:
	https://scilpy.readthedocs.io/en/latest/documentation/tractogram_registration.html
	
	positional arguments:
	  in_file               Path of the file to be transformed (nii or nii.gz)
	  in_target_file        Path of the reference target file (.nii.gz).
	  in_transfo            Path of the file containing the 4x4 
	                        transformation, matrix (.txt, .npy or .mat).
	  out_name              Output filename of the transformed data.
	
	options:
	  -h, --help            show this help message and exit
	  --inverse             Apply the inverse transformation.
	  --keep_dtype          If True, keeps the data_type of the input image (in_file) when saving the output image (out_name).
	  --interpolation {linear,nearest}
	                        Interpolation: "linear" or "nearest". [linear]
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2