.. _scil_viz_tractogram_seeds_3d:

scil_viz_tractogram_seeds_3d
============================

::

	usage: __main__.py [-h] [--tractogram TRACTOGRAM] [--colormap COLORMAP]
	                   [--seed_opacity SEED_OPACITY]
	                   [--tractogram_shape {line,tube}]
	                   [--tractogram_opacity TRACTOGRAM_OPACITY]
	                   [--tractogram_width TRACTOGRAM_WIDTH]
	                   [--tractogram_color R G B [R G B ...]]
	                   [--background R G B [R G B ...]] [--silent]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]]
	                   in_seed_map
	
	Visualize seeds as 3D points, with heatmaps corresponding to seed density
	
	Example usages:
	
	>>> scil_viz_tractogram_seeds_3d seeds.nii.gz --tractogram tractogram.trk
	
	positional arguments:
	  in_seed_map           Seed density map.
	
	options:
	  -h, --help            show this help message and exit
	  --tractogram TRACTOGRAM
	                        Tractogram coresponding to the seeds.
	  --colormap COLORMAP   Name of the map for the density coloring. Can be any colormap that matplotlib offers.
	                        [Default: bone]
	  --seed_opacity SEED_OPACITY
	                        Opacity of the contour generated.
	                        [Default: 0.5]
	  --tractogram_shape {line,tube}
	                        Display streamlines either as lines or tubes.
	                        [Default: tube]
	  --tractogram_opacity TRACTOGRAM_OPACITY
	                        Opacity of the streamlines.
	                        [Default: 0.5]
	  --tractogram_width TRACTOGRAM_WIDTH
	                        Width of tubes or lines representing streamlines.
	                        [Default: 0.05]
	  --tractogram_color R G B [R G B ...]
	                        Color for the tractogram.
	  --background R G B [R G B ...]
	                        RBG values [0, 255] of the color of the background.
	                        [Default: [0, 0, 0]]
	  --silent              If set, runs the script but does not display the window. For debugging purposes.
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	
	2.2.2