.. _scil_viz_bingham_fit:

scil_viz_bingham_fit
====================

::

	usage: __main__.py [-h] [--slice_index SLICE_INDEX] [--win_dims WIDTH HEIGHT]
	                   [--interactor {image,trackball}]
	                   [--axis_name {sagittal,coronal,axial}] [--silent]
	                   [--output OUTPUT] [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   [--sphere {repulsion100,repulsion200,repulsion724,symmetric362,symmetric642,symmetric724}]
	                   [--color_per_lobe]
	                   in_bingham
	
	Visualize 2-dimensional Bingham volume slice loaded from disk. The volume is
	assumed to be saved from scil_fodf_to_bingham.
	
	Given an image of Bingham coefficients, this script displays a slice in a
	given orientation.
	
	Note. The interactive visualization is not verified by tests. If you encounter
	any bug, please report it to our team or use --silent.
	
	positional arguments:
	  in_bingham            Input SH image file. Expecting data to be of size (X, Y, Z, nb_lobes, 7)
	
	options:
	  -h, --help            show this help message and exit
	  --slice_index SLICE_INDEX
	                        Index of the slice to visualize along a given axis. Defaults to middle of volume.
	  --win_dims WIDTH HEIGHT
	                        The dimensions for the vtk window. [(768, 768)]
	  --interactor {image,trackball}
	                        Specify interactor mode for vtk window. [trackball]
	  --axis_name {sagittal,coronal,axial}
	                        Name of the axis to visualize. [axial]
	  --silent              Disable interactive visualization.
	  --output OUTPUT       Path to output image file.
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	  --sphere {repulsion100,repulsion200,repulsion724,symmetric362,symmetric642,symmetric724}
	                        Name of the sphere used to reconstruct SF. [symmetric362]
	  --color_per_lobe      Color each bingham distribution with a different color. [False]
	
	2.2.2