.. _scil_tractogram_convert:

scil_tractogram_convert
=======================

::

	usage: __main__.py [-h] [--legacy_vtk] [--no_bbox_check]
	                   [--reference REFERENCE] [-v [{DEBUG,INFO,WARNING,ERROR}]]
	                   [-f]
	                   in_tractogram output_name
	
	Conversion of '.tck', '.trk', '.fib', '.vtk' and 'dpy' files using updated file
	format standard. TRK file always needs a reference file, a NIFTI, for
	conversion. The FIB file format is in fact a VTK, MITK Diffusion supports it.
	
	positional arguments:
	  in_tractogram         Tractogram filename. Format must be one of 
	                        trk, tck, vtk, fib, dpy
	  output_name           Output filename. Format must be one of 
	                        trk, tck, vtk, fib, dpy
	
	options:
	  -h, --help            show this help message and exit
	  --legacy_vtk          Use the legacy VTK format for streamlines. This is the old VTK format, which is supported by MI-Brain.
	  --no_bbox_check       Activate to ignore validity of the bounding box during loading / saving of 
	                        tractograms (ignores the presence of invalid streamlines).
	  --reference REFERENCE
	                        Reference anatomy for tck/vtk/fib/dpy file
	                        support (.nii or .nii.gz).
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2