.. _scil_plot_stats_per_point:

scil_plot_stats_per_point
=========================

::

	usage: __main__.py [-h] [--stats_over_population] [--nb_pts NB_PTS]
	                   [--display_means]
	                   [--fill_color FILL_COLOR | --dict_colors DICT_COLORS]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_json out_dir
	
	Plot all mean/std per point for a subject or population json file from
	tractometry-flow.
	WARNING: For population, the displayed STDs is only showing the variation
	of the means. It does not account intra-subject STDs.
	
	positional arguments:
	  in_json               JSON file containing the mean/std per point. For example, can be created using scil_bundle_mean_std.
	  out_dir               Output directory.
	
	options:
	  -h, --help            show this help message and exit
	  --stats_over_population
	                        If set, consider the input stats to be over an entire population and not subject-based.
	  --nb_pts NB_PTS       Force the number of divisions for the bundles.
	                        Avoid unequal plots across datasets, replace missing data with zeros.
	  --display_means       Display the subjects means as semi-transparent line.
	                        Poor results when the number of subject is high.
	  --fill_color FILL_COLOR
	                        Hexadecimal RGB color filling the region between mean +/- std. The hexadecimal RGB color should be formatted as 0xRRGGBB.
	  --dict_colors DICT_COLORS
	                        Dictionnary mapping basename to color.Same convention as --color.
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2