.. _scil_labels_remove:

scil_labels_remove
==================

::

	usage: __main__.py [-h] -i INDICES [INDICES ...] [--background BACKGROUND]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_labels out_labels
	
	Script to remove specific labels from an atlas volume.
	
	    >>> scil_labels_remove DKT_labels.nii out_labels.nii.gz -i 5001 5002
	
	----------------------------------------------------------------------------
	Reference:
	[1] Al-Sharif N.B., St-Onge E., Vogel J.W., Theaud G.,
	    Evans A.C. and Descoteaux M. OHBM 2019.
	    Surface integration for connectome analysis in age prediction.
	----------------------------------------------------------------------------
	
	positional arguments:
	  in_labels             Input labels volume.
	  out_labels            Output labels volume.
	
	options:
	  -h, --help            show this help message and exit
	  -i INDICES [INDICES ...], --indices INDICES [INDICES ...]
	                        List of labels indices to remove.
	  --background BACKGROUND
	                        Integer used for removed labels [0].
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2