.. _scil_labels_from_mask:

scil_labels_from_mask
=====================

::

	usage: __main__.py [-h] [--labels LABELS [LABELS ...]]
	                   [--background_label BACKGROUND_LABEL]
	                   [--min_volume MIN_VOLUME] [-v [{DEBUG,INFO,WARNING,ERROR}]]
	                   [-f]
	                   in_mask out_labels
	
	Script to obtain labels from a binary mask which contains multiple blobs.
	
	The script will assign a label to each blob in the mask. The background label
	is excluded from the labels list. By default, the background label is 0 and
	the labels are assigned in increasing order starting from 1.
	
	positional arguments:
	  in_mask               Input mask file.
	  out_labels            Output label file.
	
	options:
	  -h, --help            show this help message and exit
	  --labels LABELS [LABELS ...]
	                        Labels to assign to each blobs in the mask. Excludes the background label.
	  --background_label BACKGROUND_LABEL
	                        Label to assign to the background. [0]
	  --min_volume MIN_VOLUME
	                        Minimum volume in mm3 [7],Useful for lesions.
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2