.. _scil_json_harmonize_entries:

scil_json_harmonize_entries
===========================

::

	usage: __main__.py [-h] [--indent INDENT] [--sort_keys]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_file out_file
	
	 This script will harmonize a json file by adding missing keys and values
	that differs between the different layers of the dictionary.
	
	This is used only (for now) in Aggregate_All_* portion of tractometry-flow,
	to counter the problem of missing bundles/metrics/lesions between subjects.
	
	The most common use case is when specific subjects have missing bundles
	which will cause a panda array to be incomplete, and thus crash. Finding out
	the union of all bundles/metrics/lesions will allow to create a complete json
	(but with NaN for missing values).
	
	positional arguments:
	  in_file               Input file (json).
	  out_file              Output file (json).
	
	options:
	  -h, --help            show this help message and exit
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	Json options:
	  --indent INDENT       Indent for json pretty print.
	  --sort_keys           Sort keys in output json.
	
	2.2.2