.. _scil_dwi_convert_FDF:

scil_dwi_convert_FDF
====================

::

	usage: __main__.py [-h] [--bval BVAL] [--bvec BVEC]
	                   [--flip dimension [dimension ...]]
	                   [--swap dimension [dimension ...]]
	                   [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_b0_path in_dwi_path out_path
	
	Converts a Varian FDF file or directory to a nifti file.
	If the procpar contains diffusion information, it will be saved as bval and
	bvec in the same folder as the output file.
	
	ex: scil_dwi_convert_FDF semsdw/b0_folder/ semsdw/dwi_folder/         dwi.nii.gz --bval dwi.bval --bvec dwi.bvec -f
	
	positional arguments:
	  in_b0_path            Path to the b0 FDF file or folder to convert.
	  in_dwi_path           Path to the DWI FDF file or folder to convert.
	  out_path              Path to the nifti file to write on disk.
	
	options:
	  -h, --help            show this help message and exit
	  --bval BVAL           Path to the bval file to write on disk.
	  --bvec BVEC           Path to the bvec file to write on disk.
	  --flip dimension [dimension ...]
	                        The axes you want to flip. eg: to flip the x and y axes use: x y. [None]
	  --swap dimension [dimension ...]
	                        The axes you want to swap. eg: to swap the x and y axes use: x y. [None]
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2