.. _scil_connectivity_print_filenames:

scil_connectivity_print_filenames
=================================

::

	usage: __main__.py [-h] [-v [{DEBUG,INFO,WARNING,ERROR}]] [-f]
	                   in_matrix labels_list out_txt
	
	Output the list of filenames using the coordinates from a binary connectivity
	matrix. Typically used to move around files that are considered valid after
	the scil_connectivity_filter script.
	
	Example:
	# Keep connections with more than 1000 streamlines for 100% of a population
	scil_connectivity_filter filtering_mask.npy
	    --greater_than */streamlines_count.npy 1000 1.0
	scil_connectivity_print_filenames filtering_mask.npy
	    labels_list.txt pass.txt
	for file in $(cat pass.txt);
	    do mv ${SOMEWHERE}/${FILE} ${SOMEWHERE_ELSE}/;
	done
	
	positional arguments:
	  in_matrix             Binary matrix in numpy (.npy) format.
	                        Typically from scil_connectivity_filter
	  labels_list           List saved by the decomposition script.
	  out_txt               Output text file containing all filenames.
	
	options:
	  -h, --help            show this help message and exit
	  -v [{DEBUG,INFO,WARNING,ERROR}]
	                        Produces verbose output depending on the provided level. 
	                        Default level is warning, default when using -v is info.
	  -f                    Force overwriting of the output files.
	
	2.2.2